Scott Edmunds - July 12, 2015
BOSC2015 has in Dublin has just ended, so we look back over the meeting at some of the talks we enjoyed, and projects we have participated in.
Scott Edmunds - July 3, 2015
A follow-up Q&A from Pat Soranno, sharing her thoughts on reproducible ecology and the challenges it presents.
Scott Edmunds - June 4, 2015
Announcing this week the B10K project, Guojie Zhang explains how they plan to sequence all the 10,000 bird genomes.
Scott Edmunds - May 26, 2015
All Cats (Microbiomes) are Grey? Regular readers will have seen our interest in “community genome” projects, supported by crowdfunding and alternative means (fashion shows in case of the “peoples parrot”), and we’ve been pleased to see the Azolla fern and Cactus genome projects that we published guest GigaBlog postings from both achieve their funding targets. […]
Scott Edmunds - May 13, 2015
With our focus on large-scale biological data, mass spectrometry has been one area of particular interest and attention. Metabolomics involves the detection and quantification of small molecules (metabolites) in living organisms using mass spectrometers. The measurements made from these sophisticated instruments are analysed using computational programs to determine the abundances of metabolites, the results of […]
Scott Edmunds - April 28, 2015
What is BioCuration? While many around the world may be unclear as to what biocuration entails, in China the issue is further complicated by the fact that there isn’t a really a readily accepted word for it. Despite being home to some of the world’s biggest producers of biological data such as BGI (genomics) and […]
Andy Kilianski and Sam Minot - March 27, 2015
Sam Minot from Signature Science, LLC and Andy Kilianski from the Edgewood Chemical Biological Center are part of a team that has been trialling a new palm-sized DNA sequencer to test whether it can characterize viruses and bacteria. Their findings, published in GigaScience, suggest the device could have potential for disease diagnosis in the field.
Amye Kenall - March 24, 2015
On March 19th and 20th, the Center for Open Science hosted a small meeting in Charlottesville, VA, convened by COS and co-organized by Kaitlin Thaney (Mozilla Science Lab) and Titus Brown (UC Davis). People working across the open science ecosystem attended, including publishers, infrastructure non-profits, public policy experts, community builders, and academics.
Scott Edmunds - March 13, 2015
Peng Jiang and Hui Guo from the University of Georgia provide a guest post covering their crowdfunding efforts to sequence the first cactus genome.
Scott Edmunds - February 26, 2015
The software application PLINK is one of the most widely used tools in bioinformatics, particularly for genome-wide association studies (GWAS) that look at genetic variants in different individuals to see if any variant is associated with a trait. With the advent of the thousand dollar genome, the computational demands being made on such programs are […]