Latest posts
Reproducible Classification. Q&A on ShinyLearner & the CODECHECK certificate, pt. 2
Scott Edmunds - April 8, 2020
Q&A with Stephen Piccolo talking about ShinyLearner, a benchmarking tool for machine-learning classification algorithms, & how it was tested with CODECHECK
Certified Reproducibility. Q&A on ShinyLearner & the CODECHECK certificate, pt. 1
Scott Edmunds - April 7, 2020
Out today in GigaScience is ShinyLearner, a new tool to make it easier to perform benchmark comparisons of classification algorithms. This tool stands out by making this process super systematic and reproducible, and despite needing to interface with many different libraries and languages it uses software containers (and a CodeOcean demo) so end users don’t […]
Things to do when stuck at home because of the Coronavirus: Get Annotating
Scott Edmunds - March 26, 2020
Stuck indoors and bored of passively reading information on the coronavirus (and more) when you could be doing something more constructive? GigaScience now has hypothes.is integration for collaborative annotation, and we would encourage readers to interact with our content more collaboratively. Here we outline eight things we do to add value to papers with such […]
Under Construction: Plant and Animal Genomes Get a Refurb
Scott Edmunds - March 1, 2020
As publishers of a lot of plant and animal genomes, the biggest conference for this research community is the appropriately named Plant and Animal Genome Conference (PAG). We’ve attended a number of these giant meetings in their San Diego base, and in recent years they have been branching out to host satellites in Asia (PAG […]
Guest Blog: Data in the time of Coronavirus
Scott Edmunds - February 4, 2020
With much of the GigaScience team spanning the Hong Kong-Shenzhen border and now confined to remote working, the current 2019-novel coronavirus outbreak has been particularly disruptive and close to home. As with previous WHO “public-health emergency of international concern” such as Ebola and Zika, data has provided a potent tool in fighting both the outbreak, and […]
The genome of an elusive giant
Hans Zauner - January 16, 2020
Hear more on how an international team led by researchers at the University of Copenhagen has sequenced the elusive giant squid genome.
Big data, big conferences, big plans: 2019 in review
Hans Zauner - December 21, 2019
This is the last blog post of 2019 and it is time again to look back at some of the amazing research published in GigaScience over the past year. Besides handling manuscripts, reviews and data, the editors and curators also attended conferences near and far, they contributed to policy discussions and prepared the launch of […]
GigaScience at ASCB|EMBO 2019 Meeting, Washington DC
Chris Armit - December 19, 2019
The Walter E. Washington Convention Center in Washington DC was the venue for this year’s ASCB|EMBO 2019 Meeting that took place on 7-11 December 2019. The American Society of Cell Biology conference, now merged with the EMBO meeting, is the largest yearly gathering for the cell imaging community, and GigaScience has attended in the past. […]
FAIRsharing Guestpost: What Criteria Matters with Data Repository Selection?
Scott Edmunds - November 29, 2019
As part of the FAIRsharing Community Network (see previous blog) and joint Force11 and Research Data Alliance (RDA) FAIRsharing Working Group we have been involved in efforts to develop a shared, cross-publisher list of recommended data deposition repositories. The first fruits of these are a preprint from the working group and DataCite (of which we […]
Seeing is Believing
Chris Armit - October 29, 2019
EMBL Heidelberg was the venue for the EMBL Symposium: Seeing is Believing – Imaging the Molecular Processes of Life that took place on 9-12 October 2019. This was the second EMBL meeting on imaging data we attending this year after VIZBI (see the write-up here), GigaScience Data Scientist Chris Armit was there and was astonished […]