Tag Archives: Q&A

Coronavirus research needs to be a marathon, not a sprint

- August 18, 2020

Coronavirus trends

Not only epidemics themselves come in waves, also research into emerging infectious diseases has ups and downs, a Gigascience paper published today reports. The authors at Ben-Gurion University of the Negev analysed more than 35 million papers and explored research (scientometric trends) related to nine different infectious diseases. The scientific literature screened for this study spans 20 […]

Continue reading

0 comments

DNA day 2020: The genomes of Dominette and Esperanza

- April 25, 2020

It’s DNA day, celebrating two historic milestones: The publication of the structure of DNA in 1953, and the completion of the human genome project in 2003. What better occasion could there be to take a step back and marvel at the breath-taking progress in genomics over the years. For this year’s special DNA day blog, GigaScience […]

Continue reading

0 comments

Reproducible Classification. Q&A on ShinyLearner & the CODECHECK certificate, pt. 2

- April 8, 2020

ShinyLearner

This week we showcased a new way of peer reviewing software, testing code in an independent manner and providing a CODECHECK “certificate of reproducible computation” when the results in the paper can be reproduced. We’ve written a post on the CODECHECK process featuring a Q&A with CODECHECK founder Stephen Eglan, and here we’ll provide a follow […]

Continue reading

0 comments

Certified Reproducibility. Q&A on ShinyLearner & the CODECHECK certificate, pt. 1

- April 7, 2020

CODECHECK certificate

Out today in GigaScience is ShinyLearner, a new tool to make it easier to perform benchmark comparisons of classification algorithms. This tool stands out by making this process super systematic and reproducible, and despite needing to interface with many different libraries and languages it uses software containers (and a CodeOcean demo) so end users don’t […]

Continue reading

0 comments

iMicrobe: Fostering Community-Driven Science and Data Discovery. Q&A with Bonnie Hurwitz

- August 2, 2019

In this data-driven era, research is faced with new challenges, from sharing, storing and accessing data, including how to better integrate data to answer big questions in science. With many data repositories available, it is hard to maintain them all – some repositories are forced to close – meaning loss of access to invaluable datasets.  […]

Continue reading

0 comments

Power to the People and Their Data – The Open Humans Way. Q&A with Bastian Greshake Tzovaras and Mad Price Ball

- June 27, 2019

In the data driven era, not only in research but in our day-to-day lives, people are creating more and more personal digitized data that enables human-participant research in social sciences and personalized medicine. However, with numerous data streams and types this raises concerns such as how to merge and share such data, as well as […]

Continue reading

0 comments

Meet the GigaScience ICG Prize Winner, Pt. 2: Lisa Johnson Q&A

- December 14, 2018

ICG prize winner

Yesterday we published the winning paper of the second GigaScience prize, with additional detail and coverage in GigaBlog describing why we and the judging panel found it so novel. This was an impressively case study in reproducibility, reassembling & reannotating around 700 microbial eukaryotic transcriptomes to demonstrate this approach can aid in revealing new biologically relevant […]

Continue reading

0 comments

Preprint.Space, The Final Frontier

- May 24, 2018

Preprint.Space logo

Open Science Trek, The Next Integration Fostering and promoting more open and transparent science is one of the goals of GigaScience, and to do this we have been big promoters of open peer review as well as preprints servers. Combining both of these, Academic Karma was the one of the first platforms to focus on […]

Continue reading

0 comments

CRISPR-based Epigenome Editing: Author Q&A with Alun Luo

- April 24, 2018

Alun Luo presenting at KI HK

The CRISPR/Cas9 system has opened new horizons in what can be done with genome editing. Here we present an author Q&A with Alun Yonglun Luo discussing his new paper in GigaScience moving this technology towards epigenome editing and testing its efficacy and accuracy. Modulating Methylation: Epigenome Editing With our scope focussing the “biological big data” […]

Continue reading

0 comments

On the trail of the elusive Solenodon genome. Q&A with Taras Oleksyk

- March 19, 2018

Researchers have sequenced the venomous Solenodon, the last survivor of a branch of mammals that appeared at the time of the dinosaurs. Here we give some behind the scenes insight with some of the authors of this prize winning project, and include a Q&A with lead author Taras Oleksyk. Our latest paper presents a draft […]

Continue reading

0 comments