Tag Archives: open science
GigaByte Wins 2022 ALPSP Innovation Award
Scott Edmunds - September 21, 2022
GigaByte Journal wins the ALPSP Innovation Award for their interactive articles and tools aimed at fulfilling the UNESCO Recommendation on Open Science
Open Science Milestones and the return of in-person meetings at ISMB2022
Scott Edmunds - July 19, 2022
Write-up of GigaScience’s 10th birthday at ISMB2022 in Wisconsin, birthday series of papers, and it’s efforts to map to the UNESCO Open Science Recommendations
Open Access Week 2021: GigaScience’s 10 Examples of Open
Scott Edmunds - October 29, 2021
For Open Access Week 2021 we look back over 10 of our favourite GigaScience papers providing examples of barriers we’ve tried to break for more open science.
Guest Posting: Help Crowdfund the Transbiome
Scott Edmunds - March 2, 2021
A guest posting with the Transbiome team on their community driven research program using crowdfunding and co-creation to discover the diversity of the neo-vaginal microbiome.
New beginnings during a pandemic – the COVID year in review
Hans Zauner - December 17, 2020
Looking back at this unusual year, we are happy to report that GigaScience not only kept going under difficult circumstances, publishing outstanding examples of Big Data science and introducing innovations in the review process. We also opened a new chapter with the launch of a sister journal, GigaByte .
A New Monitoring Tool Empowering Infectious Disease Detectives
Scott Edmunds - October 22, 2020
Out this week in GigaScience is a new monitoring tool empowering infectious disease detectives. Scientists in Cambodia, who are supported by the Chan Zuckerberg Initiative, the Chan Zuckerberg Biohub, and the Bill & Melinda Gates Foundation, used the new IDseq tool to help confirm and sequence the whole genome of the country’s first case of COVID-19. Read more here.
Giga Gets Bigger: GigaByte kickstarts GigaScience Press
Scott Edmunds - September 4, 2020
GigaScience has spawned a new smaller and more agile sibling: GigaByte, and is the first journal to come from our new GigaScience Press. This bigger and better GigaScience family has lead to some changes in GigaScience, and we are pleased to make some important announcements about the team. Coming shortly after our 8th birthday, GigaScience […]
Reproducible Classification. Q&A on ShinyLearner & the CODECHECK certificate, pt. 2
Scott Edmunds - April 8, 2020
This week we showcased a new way of peer reviewing software, testing code in an independent manner and providing a CODECHECK “certificate of reproducible computation” when the results in the paper can be reproduced. We’ve written a post on the CODECHECK process featuring a Q&A with CODECHECK founder Stephen Eglan, and here we’ll provide a follow […]
Certified Reproducibility. Q&A on ShinyLearner & the CODECHECK certificate, pt. 1
Scott Edmunds - April 7, 2020
Out today in GigaScience is ShinyLearner, a new tool to make it easier to perform benchmark comparisons of classification algorithms. This tool stands out by making this process super systematic and reproducible, and despite needing to interface with many different libraries and languages it uses software containers (and a CodeOcean demo) so end users don’t […]
iMicrobe: Fostering Community-Driven Science and Data Discovery. Q&A with Bonnie Hurwitz
Nicole Nogoy - August 2, 2019
In this data-driven era, research is faced with new challenges, from sharing, storing and accessing data, including how to better integrate data to answer big questions in science. With many data repositories available, it is hard to maintain them all – some repositories are forced to close – meaning loss of access to invaluable datasets. […]