Tag Archives: open science
Reproducible Classification. Q&A on ShinyLearner & the CODECHECK certificate, pt. 2
Scott Edmunds - April 8, 2020
This week we showcased a new way of peer reviewing software, testing code in an independent manner and providing a CODECHECK “certificate of reproducible computation” when the results in the paper can be reproduced. We’ve written a post on the CODECHECK process featuring a Q&A with CODECHECK founder Stephen Eglan, and here we’ll provide a follow […]
Certified Reproducibility. Q&A on ShinyLearner & the CODECHECK certificate, pt. 1
Scott Edmunds - April 7, 2020
Out today in GigaScience is ShinyLearner, a new tool to make it easier to perform benchmark comparisons of classification algorithms. This tool stands out by making this process super systematic and reproducible, and despite needing to interface with many different libraries and languages it uses software containers (and a CodeOcean demo) so end users don’t […]
iMicrobe: Fostering Community-Driven Science and Data Discovery. Q&A with Bonnie Hurwitz
Nicole Nogoy - August 2, 2019
In this data-driven era, research is faced with new challenges, from sharing, storing and accessing data, including how to better integrate data to answer big questions in science. With many data repositories available, it is hard to maintain them all – some repositories are forced to close – meaning loss of access to invaluable datasets. […]
Power to the People and Their Data – The Open Humans Way. Q&A with Bastian Greshake Tzovaras and Mad Price Ball
Nicole Nogoy - June 27, 2019
In the data driven era, not only in research but in our day-to-day lives, people are creating more and more personal digitized data that enables human-participant research in social sciences and personalized medicine. However, with numerous data streams and types this raises concerns such as how to merge and share such data, as well as […]
GigaBlog meets Gigantum: Guest Post from Tyler Whitehouse, Dean Kleissas and Dav Clark
Nicole Nogoy - June 20, 2019
At GigaScience as our focus is on reproducibility rather than subjective impact, it can be challenging at times to judge this in our papers. Targeting the “bleeding edge” of data-driven research, more and more of our papers utilise technologies, such as Jupyter notebooks, Virtual Machines, and Containers such as Docker. Working these tools in to […]
Citizen Science goes mainstream. Back at the UN with the Citizen Science Global Partnership.
Scott Edmunds - March 29, 2019
Citizen Science at UNEA4 As GigaScience has the aim of opening and democratising science as far as it can go, we even work towards the involvement of non-professional “citizen scientists” in the scientific process. Regular readers of this blog and journal will have seen the many crowdfunded and educational community genome projects we have promoted […]
Preprint.Space, The Final Frontier
Scott Edmunds - May 24, 2018
Open Science Trek, The Next Integration Fostering and promoting more open and transparent science is one of the goals of GigaScience, and to do this we have been big promoters of open peer review as well as preprints servers. Combining both of these, Academic Karma was the one of the first platforms to focus on […]
… and a Happy New Year
Hans Zauner - December 19, 2017
The year is almost over and it’s time to review the highlights of GigaScience’s 2017. 2017 was as special year for GigaScience: a year of many firsts and we celebrated our 5th birthday! An occasion to look back – and forward, as we did in our anniversary editorial. We marked the completion of our first […]
Citizen Smith goes to Nairobi. Taking Citizen Science to the UN
Scott Edmunds - December 15, 2017
GigaScience utilizes and promotes Open Science in all its forms, and one of the key areas in this ecosystem is Citizen Science – opening and democratising science to such an extent it is powered by public participation. Regular readers of this blog and journal will have seen our promotion of many crowdfunded and educational community […]
And the winner is? Our #ICG12 prize track on GigaTV
Scott Edmunds - November 27, 2017
Last month was the 7th consecutive year we’ve attended our co-publisher BGI’s annual ICG (International Conference on Genomics) gathering in Shenzhen. While we’ve assisted in organising a number of fun thematic tracks over the years including ICG-8’s crowdsourcing, crowdfunding and open science session, and ICG-10’s community genomics session, for ICG12 this year we decided to […]