Tag Archives: genomics
FUNC in the Fjords: Functional Metagenomics 2019 in Trondheim
Nicole Nogoy - July 27, 2019
The Norwegian city of Trondheim seemed the place to be this June – with hotels in high demand due to the BarCode Of Life conference, The Big Challenge Science Festival (including a concert by that famous science communicator Sting), and the Functional Metagenomics 2019 conference (#FMG2019) all taking place over the same period (June 16-19th). […]
PAG Asia 2019: Plant and Animal Genomes (with Chinese Characteristics)
Chris Armit - July 3, 2019
Regular readers will know GigaScience has published a lot of plant and animal genomes, and the biggest conference for this research community is the appropriately named Plant & Animal Genome Conference (PAG). We’ve attended a number of these giant meetings at their San Diego base, and in recent years they have been branching out to […]
Genomics Standards on the Danube. GigaScience at GSC21 in Vienna
Chris Armit - June 3, 2019
The 21st meeting of the Genomics Standards Consortium (GSC21) took place last week in Vienna at one of the oldest universities in the world – the University of Vienna – from May 20th-23rd. We’ve been long time supporters and participants of the Genomics Standards Consortium meetings going back to 2012’s GSC13 in Shenzhen, and have […]
Mock the Metagenome. Author Q&A with Nick Loman & Sam Nicholls
Scott Edmunds - May 15, 2019
The mock metagenome, MAGs and breaking the first rule of Long Read Club Out today in GigaScience is a new “mock metagenome” Data Note from the Nick Loman lab in Birmingham showcasing the latest long-read sequencing technologies from Oxford Nanopore. Having published the first nanopore E. coli genome with us in 2014 showcasing the then […]
Planetary Genomes. Creating a Digital Botanical Garden.
Scott Edmunds - January 28, 2019
Our Biggest Dataset Yet. Oh, Ruili? A new Data Note provides genome sequencing data that effectively triples the number of plant species with available genome data. This mammoth amount of work comes on the back of the growing efforts of the scientific community to sequence more plant genomes to aid in understanding their complex evolution […]
Meet the GigaScience ICG Prize Winner, Pt. 2: Lisa Johnson Q&A
Scott Edmunds - December 14, 2018
Yesterday we published the winning paper of the second GigaScience prize, with additional detail and coverage in GigaBlog describing why we and the judging panel found it so novel. This was an impressively case study in reproducibility, reassembling & reannotating around 700 microbial eukaryotic transcriptomes to demonstrate this approach can aid in revealing new biologically relevant […]
Reprocessing the Microbial Genomic Goldmine: Winner of the ICG13 Prize
Scott Edmunds - December 13, 2018
Out today is the winner of our ICG13 Prize, presenting work that can aid in revealing new biologically relevant findings and missed genes from previously generated transcriptome assemblies. Teaching old data new tricks, and maximising every last nugget of information from previously funded research. Here we present some insight into why the reviewers and judges […]
Tegu: the most complete assembly of any reptile genome
Hans Zauner - November 28, 2018
Today in GigaScience we present the genome of the tegu lizard. It is the most complete assembly of any reptile genome so far and will also aid scientists to study other lizards and snakes. The tegu has mastered a trick that is highly unusual in the reptile world: it can turn on its own heating […]
Meet the GigaScience ICG Prize Winners, Pt. 1: Aequatus
Scott Edmunds - November 14, 2018
This is the Dawning of the Age of Aequatus Our ICG Prize is over now for another year, and we’ll shortly follow up with an announcement on which of the six winners won the $1000 first prize. To help you see how great all the entries were we will introduce and profile some of the […]
Making sense of pangenome networks
Hans Zauner - October 15, 2018
Navigating Pangenome’s Labyrinth In the two decades since the first genomes were sequenced, with the exponential growth of new and closely related genomes it has become increasingly difficult to visualise and compare their structure. Particularly with the large diversity and difference in genes within microbial genomes. A new computational pipeline, published in GigaScience, makes it […]