Tag Archives: open data

As part of the FAIRsharing Community Network (see previous blog) and joint Force11 and Research Data Alliance (RDA) FAIRsharing Working Group we have been involved in efforts to develop a shared, cross-publisher list of recommended data deposition repositories. The first fruits of these are a preprint from the working group and DataCite (of which we […]

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Lessons learned in the evolution of large-scale data sharing New studies out today elucidate the framework for 1 billion years of green plant evolution. The work are the results of nearly a decades work from an international consortium of nearly 200 plant researchers generating gene sequences from more than 1100 plant species. Here and in […]

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In this data-driven era, research is faced with new challenges, from sharing, storing and accessing data, including how to better integrate data to answer big questions in science. With many data repositories available, it is hard to maintain them all – some repositories are forced to close – meaning loss of access to invaluable datasets.  […]

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In the data driven era, not only in research but in our day-to-day lives, people are creating more and more personal digitized data that enables human-participant research in social sciences and personalized medicine. However, with numerous data streams and types this raises concerns such as how to merge and share such data, as well as […]

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At GigaScience as our focus is on reproducibility rather than subjective impact, it can be challenging at times to judge this in our papers. Targeting the “bleeding edge” of data-driven research, more and more of our papers utilise technologies, such as Jupyter notebooks, Virtual Machines, and Containers such as Docker. Working these tools in to […]

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Citizen Science at UNEA4 As GigaScience has the aim of opening and democratising science as far as it can go, we even work towards the involvement of non-professional “citizen scientists” in the scientific process. Regular readers of this blog and journal will have seen the many crowdfunded and educational community genome projects we have promoted […]

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The diffraction limit of a microscope hinders the ability to see single molecules as the optics do not allow the researcher to distinguish between two fluorescently labelled molecules that are less than 200nm apart. As a means of overcoming this barrier, super-resolution microscopy utilises various tricks to go beyond the diffraction limit and image sub-cellular […]

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Our Biggest Dataset Yet. Oh, Ruili? A new Data Note provides genome sequencing data that effectively triples the number of plant species with available genome data. This mammoth amount of work comes on the back of the growing efforts of the scientific community to sequence more plant genomes to aid in understanding their complex evolution […]

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Yesterday we published the winning paper of the second GigaScience prize, with additional detail and coverage in GigaBlog describing why we and the judging panel found it so novel. This was an impressively case study in reproducibility, reassembling & reannotating around 700 microbial eukaryotic transcriptomes to demonstrate this approach can aid in revealing new biologically relevant […]

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Pressing Challenges for the Global Research Community Continuous growth of the world population is expected to double the worldwide demand for food by 2050. Eighty-eight percent of countries currently face a serious burden of malnutrition, especially in Africa and South-East Asia. To diversify and stabilize global food supply, enhance agricultural productivity and tackle malnutrition, greater […]

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